Package: dbSequence
Title: DuckDB-Backed Interface for Large-Scale Genomic Data
Version: 0.99.1
Authors@R: 
    c(
        person("Edward C.", "Ruiz", , "ecr7407@gmail.com", role = c("aut", "cre"),
               comment = c(ORCID = "0000-0002-9174-5387")),
        person("Ruben", "Dries", role = "rev"),
        person("National Human Genome Research Institute", role = "fnd",
               comment = c(grant = "1R01HG014487-01"))
    )
Description: Provides a DuckDB-backed infrastructure for working with
        large-scale genomic data that exceeds available memory.
        Supports lazy evaluation of genomic ranges and efficient
        overlap queries. Integrates with Bioconductor classes (GRanges,
        BiocIO) and provides plyranges-compatible API.
License: MIT + file LICENSE
URL: https://github.com/dbverse-org/dbSequence
BugReports: https://github.com/dbverse-org/dbSequence/issues
biocViews: Software, Infrastructure, DataImport, Sequencing, Coverage,
        DataRepresentation
BiocType: Software
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: R (>= 4.5.0)
Imports: methods, duckdb, DBI, dbplyr, dplyr, glue, arrow, BiocIO,
        rtracklayer, Rsamtools, VariantAnnotation, dbProject,
        GenomicRanges, IRanges, rlang, cli, crayon
Suggests: testthat (>= 3.0.0), SingleCellExperiment, scater, knitr,
        rmarkdown, BiocStyle, plyranges, microbenchmark
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libpng-dev libuv1-dev libxml2-dev libssl-dev xz-utils
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-06-30 21:52:08 UTC
RemoteUrl: https://github.com/bioc/dbSequence
RemoteRef: HEAD
RemoteSha: 72038b1ab57a0db75df660aa6fbe1617d405d2b7
NeedsCompilation: no
Packaged: 2026-07-08 12:17:14 UTC; root
Author: Edward C. Ruiz [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-9174-5387>),
  Ruben Dries [rev],
  National Human Genome Research Institute [fnd] (grant: 1R01HG014487-01)
Maintainer: Edward C. Ruiz <ecr7407@gmail.com>