# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "dada2" in publications use:'
type: software
license: LGPL-2.0-only
title: 'dada2: Accurate, high-resolution sample inference from amplicon sequencing
  data'
version: 1.33.0
doi: 10.1038/nmeth.3869
abstract: The dada2 package infers exact amplicon sequence variants (ASVs) from high-throughput
  amplicon sequencing data, replacing the coarser and less accurate OTU clustering
  approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs
  the sequence variants and their sample-wise abundances after removing substitution
  and chimera errors. Taxonomic classification is available via a native implementation
  of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene
  fragments by exact matching.
authors:
- family-names: Callahan
  given-names: Benjamin
  email: benjamin.j.callahan@gmail.com
- family-names: McMurdie
  given-names: Paul
- family-names: Holmes
  given-names: Susan
preferred-citation:
  type: article
  title: 'DADA2: High-resolution sample inference from Illumina amplicon data'
  authors:
  - family-names: Callahan
    given-names: Benjamin J
  - family-names: McMurdie
    given-names: Paul J
  - family-names: Rosen
    given-names: Michael J
  - family-names: Han
    given-names: Andrew W
  - family-names: Johnson
    given-names: Amy Jo A
  - family-names: Holmes
    given-names: Susan P
  journal: Nature Methods
  volume: '13'
  year: '2016'
  doi: 10.1038/nmeth.3869
  start: 581-583
repository: https://bioc.r-universe.dev
repository-code: https://github.com/benjjneb/dada2
url: http://benjjneb.github.io/dada2/
date-released: '2023-04-09'
contact:
- family-names: Callahan
  given-names: Benjamin
  email: benjamin.j.callahan@gmail.com