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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "cytomapper" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'cytomapper: Visualization of highly multiplexed imaging data in R'
version: 1.17.0
doi: 10.1093/bioinformatics/btaa1061
abstract: Highly multiplexed imaging acquires the single-cell expression of selected
  proteins in a spatially-resolved fashion. These measurements can be visualised across
  multiple length-scales. First, pixel-level intensities represent the spatial distributions
  of feature expression with highest resolution. Second, after segmentation, expression
  values or cell-level metadata (e.g. cell-type information) can be visualised on
  segmented cell areas. This package contains functions for the visualisation of multiplexed
  read-outs and cell-level information obtained by multiplexed imaging technologies.
  The main functions of this package allow 1. the visualisation of pixel-level information
  across multiple channels, 2. the display of cell-level information (expression and/or
  metadata) on segmentation masks and 3. gating and visualisation of single cells.
authors:
- family-names: Eling
  given-names: Nils
  email: nils.eling@dqbm.uzh.ch
  orcid: https://orcid.org/0000-0002-4711-1176
- family-names: Damond
  given-names: Nicolas
  email: nicolas.damond@dqbm.uzh.ch
  orcid: https://orcid.org/0000-0003-3027-8989
- family-names: Meyer
  given-names: Lasse
  email: lasse.meyer@dqbm.uzh.ch
  orcid: https://orcid.org/0000-0002-1660-1199
preferred-citation:
  type: article
  title: 'cytomapper: an R/Bioconductor package for visualisation of highly multiplexed
    imaging data'
  authors:
  - family-names: Eling
    given-names: Nils
    email: nils.eling@dqbm.uzh.ch
    orcid: https://orcid.org/0000-0002-4711-1176
  - family-names: Damond
    given-names: Nicolas
    email: nicolas.damond@dqbm.uzh.ch
    orcid: https://orcid.org/0000-0003-3027-8989
  - family-names: Hoch
    given-names: Tobias
  - family-names: Bodenmiller
    given-names: Bernd
  year: '2020'
  journal: Bioinformatics
  doi: 10.1093/bioinformatics/btaa1061
repository: https://bioc.r-universe.dev
repository-code: https://github.com/BodenmillerGroup/cytomapper
url: https://github.com/BodenmillerGroup/cytomapper
contact:
- family-names: Meyer
  given-names: Lasse
  email: lasse.meyer@dqbm.uzh.ch
  orcid: https://orcid.org/0000-0002-1660-1199