# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "cypress" in publications use:'
type: software
license:
- GPL-2.0-only
- GPL-3.0-only
title: 'cypress: Cell-Type-Specific Power Assessment'
version: 1.1.1
doi: 10.32614/CRAN.package.cypress
abstract: CYPRESS is a cell-type-specific power tool. This package aims to perform
  power analysis for the cell-type-specific data. It calculates FDR, FDC, and power,
  under various study design parameters, including but not limited to sample size,
  and effect size. It takes the input of a SummarizeExperimental(SE) object with observed
  mixture data (feature by sample matrix), and the cell-type mixture proportions (sample
  by cell-type matrix). It can solve the cell-type mixture proportions from the reference
  free panel from TOAST and conduct tests to identify cell-type-specific differential
  expression (csDE) genes.
authors:
- family-names: Yu
  given-names: Shilin
  email: sy597@georgetown.edu
  orcid: https://orcid.org/0000-0002-5494-1960
- family-names: Meng
  given-names: Guanqun
  email: gxm324@case.edu
- family-names: Tang
  given-names: Wen
  email: wxt175@case.edu
repository: https://bioc.r-universe.dev
repository-code: https://github.com/renlyly/cypress
commit: dd1c0e1351ffb460602e1e079a24d3424e6e828d
url: https://github.com/renlyly/cypress
date-released: '2024-05-27'
contact:
- family-names: Yu
  given-names: Shilin
  email: sy597@georgetown.edu
  orcid: https://orcid.org/0000-0002-5494-1960