Package: cydar
Version: 1.37.0
Date: 2024-08-11
Title: Using Mass Cytometry for Differential Abundance Analyses
Authors@R: c(person("Aaron", "Lun", role=c("aut", "cre"), email = 
        "infinite.monkeys.with.keyboards@gmail.com"))
Depends: SingleCellExperiment
Imports: viridis, methods, shiny, graphics, stats, grDevices, utils,
        BiocGenerics, S4Vectors, BiocParallel, SummarizedExperiment,
        flowCore, Biobase, Rcpp, BiocNeighbors
Suggests: ncdfFlow, testthat, rmarkdown, knitr, edgeR, limma, glmnet,
        BiocStyle, flowStats
biocViews: ImmunoOncology, FlowCytometry, MultipleComparison,
        Proteomics, SingleCell
Description: Identifies differentially abundant populations between
        samples and groups in mass cytometry data. Provides methods for
        counting cells into hyperspheres, controlling the spatial false
        discovery rate, and visualizing changes in abundance in the
        high-dimensional marker space.
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
LinkingTo: Rcpp
SystemRequirements: C++11
RoxygenNote: 7.3.2
Config/pak/sysreqs: cmake make libuv1-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:45:20 UTC
RemoteUrl: https://github.com/bioc/cydar
RemoteRef: HEAD
RemoteSha: 363374650dd85503a2555574844e9072a161f20b
Packaged: 2026-07-04 00:53:46 UTC; root
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>