# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "customProDB" in publications use:'
type: software
license: Artistic-2.0
title: 'customProDB: Generate customized protein database from NGS data, with a focus
  on RNA-Seq data, for proteomics search'
version: 1.45.0
doi: 10.1093/bioinformatics/btt543
abstract: Database search is the most widely used approach for peptide and protein
  identification in mass spectrometry-based proteomics studies. Our previous study
  showed that sample-specific protein databases derived from RNA-Seq data can better
  approximate the real protein pools in the samples and thus improve protein identification.
  More importantly, single nucleotide variations, short insertion and deletions and
  novel junctions identified from RNA-Seq data make protein database more complete
  and sample-specific. Here, we report an R package customProDB that enables the easy
  generation of customized databases from RNA-Seq data for proteomics search. This
  work bridges genomics and proteomics studies and facilitates cross-omics data integration.
authors:
- email: wenbostar@gmail.com
- family-names: Wang
  given-names: Xiaojing
preferred-citation:
  type: article
  title: 'customProDB: an R package to generate customized protein databases from
    RNA-Seq data'
  authors:
  - family-names: Wang
    given-names: Xiaojing
  - family-names: Zhang
    given-names: Bing
  year: '2013'
  journal: Bioinformatics
  volume: '29'
  doi: 10.1093/bioinformatics/btt543
  url: http://bioinformatics.oxfordjournals.org/content/29/24/3235
  start: 3235-3237
repository: https://bioc.r-universe.dev
date-released: '2024-04-03'
contact:
- email: wenbostar@gmail.com