NEWS

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customProDB 1.26.1

BUG FIXES

• Fix a small bug in function PrepareAnnotationRefseq.R

customProDB 1.20.3

UPDATED FUNCTIONS

• Fix bug in function PrepareAnnotationRefseq.R
• Update function aaVariation.R to avoid translate 'TTG' and 'CTG' into 'M'

customProDB 1.15.2

UPDATED FUNCTIONS

• Update function SharedJunc.R

customProDB 1.14.1

UPDATED FUNCTIONS

• Update mouse dbsnp version part in function PrepareAnnotationEnsembl.R
• Update function OutputVarproseq.R, JunctionType.R and calculateRPKM.R

NEW FEATURES

• Update function OutputNovelJun.R to save '_jun_anno.RData', '_coding.RData' and '_junpep.RData', which could be used as input for proBAMr package

customProDB 1.13.2

UPDATED FUNCTIONS

• Update functions PrepareAnnotationEnsembl.R and PrepareAnnotationRefseq.R due to updates in depending packages

customProDB 1.13.1

BUG FIXES

• Fix a small bug in function JunctionType.R

NEW FEATURES

• Update the function OutputVarproseq.R to output a data frame 'snvproseq'
• Add a function OutputVarprocodingseq.R to output a data frame 'snvprocoding'

customProDB 1.8.2

UPDATED FUNCTIONS

• Update functions PrepareAnnotationEnsembl.R and PrepareAnnotationRefseq.R due to updates in depending packages

customProDB 1.5.5

BUG FIXES

• Fix a bug in function OutputNovelJun.R

customProDB 1.5.4

BUG FIXES

• Fix a bug, novel junction coding sequence on '-' strand, in function OutputNovelJun.R

customProDB 1.5.3

BUG FIXES

• Fix a bug, ID mapping, in function OutputNovelJun.R