Package: curatedPCaData
Title: Curated Prostate Cancer Data
Version: 1.9.0
Date: 2024-01-10
Authors@R: c(person("Teemu Daniel", "Laajala", email = "teelaa@utu.fi", 
        role = c("aut", "cre"), comment = c(ORCID = "0000-0002-7016-7354")),
    person("Jordan", "Creed", email = "jordan.h.creed@moffitt.org", 
		role = "ctb"),
    person("Christelle", "Colin Leitzinger", email = 
	    "christelle.colinleitzinger@moffitt.org", role = "ctb"),
    person("Varsha", "Sreekanth", email = "varsha.sreekanth@cuanschutz.edu", 
	    role = "ctb"), 
    person("Federico", "Calboli", email = "federico.calboli@luke.fi", 
	    role = "ctb"),
    person("Kalaimathy", "Singaravelu", email = "kalsin@utu.fi", role = "ctb"),
    person("Michael", "Orman", email = "michael.orman@cuanschutz.edu", 
	    role = "ctb"),
    person("Alex", "Soupir", email = "Alex.Soupir@moffitt.org", role = "ctb"),
    person("Anni", "Halkola", email = "ansuha@utu.fi", role = "ctb"))
Description: The package curatedPCaData offers a selection of annotated
        prostate cancer datasets featuring multiple omics, manually
        curated metadata, and derived downstream variables. The studies
        are offered as MultiAssayExperiment (MAE) objects via
        ExperimentHub, and comprise of clinical characteristics tied to
        gene expression, copy number alteration and somatic mutation
        data. Further, downstream features computed from these
        multi-omics data are offered. Multiple vignettes help grasp
        characteristics of the various studies and provide example
        exploratory and meta-analysis of leveraging the multiple
        studies provided here-in.
License: CC BY 4.0
Encoding: UTF-8
RoxygenNote: 7.2.3
VignetteBuilder: knitr
biocViews: ExperimentHub, ExperimentData, ProstateCancerData,
        CancerData, Homo_sapiens_Data, MicroarrayData, RNASeqData,
        ExpressionData, CopyNumberVariationData, Somatic, GEO,
        ReproducibleResearch
URL: https://github.com/Syksy/curatedPCaData
BugReports: https://github.com/Syksy/curatedPCaData/issues
Depends: R (>= 4.4.0), S4Vectors (>= 0.23.18), MultiAssayExperiment,
        RaggedExperiment
Imports: ExperimentHub, AnnotationHub, utils, methods, rlang, stats,
        reshape2
Suggests: BiocStyle, knitr, ggplot2, rmarkdown, survival, survminer,
        ComplexHeatmap, corrplot, formatR
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:37:10 UTC
RemoteUrl: https://github.com/bioc/curatedPCaData
RemoteRef: HEAD
RemoteSha: 6316670fffc67ceec07214f904eaf3216a7a57f9
NeedsCompilation: no
Packaged: 2026-10-10 10:49:49 UTC; root
Author: Teemu Daniel Laajala [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7016-7354>),
  Jordan Creed [ctb],
  Christelle Colin Leitzinger [ctb],
  Varsha Sreekanth [ctb],
  Federico Calboli [ctb],
  Kalaimathy Singaravelu [ctb],
  Michael Orman [ctb],
  Alex Soupir [ctb],
  Anni Halkola [ctb]
Maintainer: Teemu Daniel Laajala <teelaa@utu.fi>