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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "curatedCRCData" in publications use:'
type: software
license: Artistic-2.0
title: 'curatedCRCData: Colorectal Cancer Gene Expression Analysis'
version: 2.45.6
doi: 10.1186/s13059-018-1511-4
identifiers:
- type: doi
  value: 10.32614/CRAN.package.curatedCRCData
abstract: Manually curated human colorectal cancer ExpressionSet objects from 34 studies,
  with uniformly processed expression data and standardized clinical metadata including
  survival outcomes. Datasets are hosted on Zenodo and downloaded on first use, then
  cached locally with BiocFileCache. Includes a configurable script for rule-based
  creation of filtered dataset lists for meta-analysis.
authors:
- family-names: Parsana
  given-names: Princy
- family-names: Riester
  given-names: Markus
- family-names: Huttenhower
  given-names: Curtis
- family-names: Waldron
  given-names: Levi
  email: lwaldron.research@gmail.com
  orcid: https://orcid.org/0000-0003-2725-0694
preferred-citation:
  type: article
  title: Continuity of transcriptomes among colorectal cancer subtypes based on meta-analysis
  authors:
  - family-names: Ma
    given-names: Siyuan
  - family-names: Ogino
    given-names: Shuji
  - family-names: Parsana
    given-names: Princy
  - family-names: Nishihara
    given-names: Reiko
  - family-names: Qian
    given-names: Zhirong
  - family-names: Shen
    given-names: Jeanne
  - family-names: Mima
    given-names: Kosuke
  - family-names: Masugi
    given-names: Yohei
  - family-names: Cao
    given-names: Yin
  - family-names: Nowak
    given-names: Jonathan A
  - family-names: Shima
    given-names: Kaori
  - family-names: Hoshida
    given-names: Yujin
  - family-names: Giovannucci
    given-names: Edward L
  - family-names: Gala
    given-names: Manish K
  - family-names: Chan
    given-names: Andrew T
  - family-names: Fuchs
    given-names: Charles S
  - family-names: Parmigiani
    given-names: Giovanni
  - family-names: Huttenhower
    given-names: Curtis
  - family-names: Waldron
    given-names: Levi
    email: lwaldron.research@gmail.com
    orcid: https://orcid.org/0000-0003-2725-0694
  journal: Genome Biology
  year: '2018'
  volume: '19'
  issue: '1'
  doi: 10.1186/s13059-018-1511-4
  start: '142'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/waldronlab/curatedCRCData
commit: b01815bb50af1f1c3f27d970c84fb8eec90b59f0
url: https://github.com/waldronlab/curatedCRCData
date-released: '2026-10-03'
contact:
- family-names: Waldron
  given-names: Levi
  email: lwaldron.research@gmail.com
  orcid: https://orcid.org/0000-0003-2725-0694