| Title: | A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) |
|---|---|
| Description: | A curated dataset of publicly available ChIP-sequencing of transcription factors, chromatin remodelers and histone modifications in the 3T3-L1 pre-adipocyte cell line. The package document the data collection, pre-processing and processing of the data. In addition to the documentation, the package contains the scripts that was used to generated the data. |
| Authors: | Mahmoud Ahmed [aut, cre] (ORCID: <https://orcid.org/0000-0002-4377-6541>) |
| Maintainer: | Mahmoud Ahmed <[email protected]> |
| License: | GPL-3 |
| Version: | 1.29.0 |
| Built: | 2026-10-10 10:43:21 UTC |
| Source: | https://github.com/bioc/curatedAdipoChIP |
curatedAdipoChIP packageA Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)
A curated dataset of publicly available ChIP-sequencing of transcription factors, chromatin remodelers and histone modifications in the 3T3-L1 pre-adipocyte cell line. The package document the data collection, pre-processing and processing of the data. In addition to the documentation, the package contains the scripts that was used to generated the data.
The dataset can be accessed through the
ExperimentHub as a RangedSummarizedExperiment
object contains:
The read counts matrix.
The phenotype data and quality control data of the samples.
The feature data and annotation of the peaks.
The study level metadata which contains one object called
studies. This is a data.frame of bibliography information of
the studies from which the samples were collected.
## Not run: # load the data object library(ExperimentHub) # query package resources on ExperimentHub eh <- ExperimentHub() query(eh, "curatedAdipoChIP") # load data from ExperimentHub peak_counts <- query(eh, "curatedAdipoChIP")[[1]] # print object peak_counts ## End(Not run)## Not run: # load the data object library(ExperimentHub) # query package resources on ExperimentHub eh <- ExperimentHub() query(eh, "curatedAdipoChIP") # load data from ExperimentHub peak_counts <- query(eh, "curatedAdipoChIP")[[1]] # print object peak_counts ## End(Not run)