# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "csawBook" in publications use:'
type: software
license: GPL-3.0-only
title: 'csawBook: The Book of csaw'
version: 1.21.0
abstract: Describes how to use the csaw package to detect differentially bound regions
  in ChIP-seq data. This provides instructions on how to read in BAM files to obtain
  a per-window count matrix, filtering to obtain high-abundance windows of interest,
  normalization of sample-specific biases, testing for differential binding, consolidation
  of per-window results to obtain per-region statistics, and annotation and visualization
  of the DB results.
authors:
- family-names: Lun
  given-names: Aaron
  email: infinite.monkeys.with.keyboards@gmail.com
preferred-citation:
  type: article
  title: 'csaw: a Bioconductor package for differential binding analysis of ChIP-seq
    data using sliding windows'
  authors:
  - family-names: Lun
    given-names: Aaron T L
  - family-names: Smyth
    given-names: Gordon K
  journal: Nucleic Acids Res.
  year: '2016'
  volume: '44'
  issue: '5'
  start: e45
repository: https://bioc.r-universe.dev
commit: 37afce4d9174d9271f106b31ef9a27bd77184731
date-released: '2024-04-17'
contact:
- family-names: Lun
  given-names: Aaron
  email: infinite.monkeys.with.keyboards@gmail.com