Package: csawBook
Version: 1.21.0
Date: 2024-04-17
Title: The Book of csaw
Authors@R: person("Aaron", "Lun", role=c("aut", "cre"), email =
    "infinite.monkeys.with.keyboards@gmail.com")
Depends: BiocFileCache, ChIPpeakAnno, chipseqDBData, csaw, edgeR, Gviz,
        org.Mm.eg.db, rebook, rmarkdown, Rsamtools, rtracklayer,
        TxDb.Mmusculus.UCSC.mm10.knownGene
biocViews: Workflow, EpigeneticsWorkflow
Description: Describes how to use the csaw package to detect
        differentially bound regions in ChIP-seq data. This provides
        instructions on how to read in BAM files to obtain a per-window
        count matrix, filtering to obtain high-abundance windows of
        interest, normalization of sample-specific biases, testing for
        differential binding, consolidation of per-window results to
        obtain per-region statistics, and annotation and visualization
        of the DB results.
License: GPL-3
VignetteBuilder: knitr
BiocType: Book
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev libjpeg-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:53:35 UTC
RemoteUrl: https://github.com/bioc/csawBook
RemoteRef: HEAD
RemoteSha: 37afce4d9174d9271f106b31ef9a27bd77184731
NeedsCompilation: no
Packaged: 2026-10-10 11:53:53 UTC; root
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>