Package: csaw
Version: 1.47.0
Date: 2025-06-20
Title: ChIP-Seq Analysis with Windows
Authors@R: 
    c(person("Aaron", "Lun", role=c("aut", "cre"), email = "infinite.monkeys.with.keyboards@gmail.com"),
    person("Gordon", "Smyth", role="aut"))
Depends: R (>= 3.5.0), GenomicRanges (>= 1.61.1), SummarizedExperiment
        (>= 1.39.1)
Imports: Rcpp, Matrix, BiocGenerics, Rsamtools, edgeR, limma, methods,
        S4Vectors, IRanges, Seqinfo, stats, BiocParallel, metapod,
        utils
Suggests: AnnotationDbi, org.Mm.eg.db,
        TxDb.Mmusculus.UCSC.mm10.knownGene, testthat, GenomicFeatures,
        GenomicAlignments, knitr, BiocStyle, rmarkdown, BiocManager
LinkingTo: Rhtslib, Rcpp
biocViews: MultipleComparison, ChIPSeq, Normalization, Sequencing,
        Coverage, Genetics, Annotation, DifferentialPeakCalling
Description: Detection of differentially bound regions in ChIP-seq data
        with sliding windows, with methods for normalization and proper
        FDR control.
License: GPL-3
NeedsCompilation: yes
SystemRequirements: C++11, GNU make
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Config/pak/sysreqs: make libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:40:01 UTC
RemoteUrl: https://github.com/bioc/csaw
RemoteRef: HEAD
RemoteSha: a48cc41b2c4014cd42df9797a475316606d7872c
Packaged: 2026-06-23 15:34:10 UTC; root
Author: Aaron Lun [aut, cre],
  Gordon Smyth [aut]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>