NEWS
crumblr 1.0.7
- Feb 1, 2022
- fix
vst()
- add plots
plotScatterDensity() and meanSdPlot() for VST
- add vignette vst.Rmd
crumblr 1.0.6
- Jan 31, 2022
- add logo, example data
crumblr 1.0.5
- Dec 27, 2021
- add
dmn.mle()
- use generic
crumblr() function
crumblr 1.0.4
- Dec 23, 2021
- Update vignette
- export
clr()
crumblr 1.0.3
crumblr 1.0.2
crumblr 1.0.1
- Oct 29, 2021
- handle
data.frame
crumblr 1.0.0
- Oct 28, 2021
- Initial version
crumblr 0.99.21
- March 10, 2025
- address Bioc comments
crumblr 0.99.20
- March 10, 2025
- address Bioc comments
crumblr 0.99.19
- Feb 12, 2025
- address Bioc comments: https://github.com/Bioconductor/Contributions/issues/3699#issuecomment-2640806359
crumblr 0.99.17
- Feb 6, 2025
- address Bioc comments: https://github.com/Bioconductor/Contributions/issues/3699#issuecomment-2640806359
crumblr 0.99.13
- Jan 14, 2025
- Bioc submission
crumblr 0.99.11
- June 14, 2024
- improve documentation
- add
plotForest()
- add
standardize()
crumblr 0.99.10
- June 12, 2024
- add
diffTree() and plotTreeTestBeta()
- regularize weight estimates
crumblr 0.99.9
- Feb 1, 2024
- add
crumblr(..,method=method) for method %in% c("clr", "clr_2class")
crumblr 0.99.8
- May 12, 2023
- in
treeTest() add argument shrink.cov = TRUE. This will give slightly different p-values, but protects against false positives when the number of features get large compared to the sample size
crumblr 0.99.7
- April 5, 2023
- fix plotting bug in
plotTreeTest()
crumblr 0.99.6
- Dec 7, 2022
- update docs, add vignette, dependencies
crumblr 0.99.5
- Nov 29, 2022
- bug fix and update docs
crumblr 0.99.4
- enforce
variancePartition version dependency
crumblr 0.99.3
buildClusterTree() uses cosine distance by default
treeTest() now uses method="treeTest" by default
crumblr 0.99.2
- update
plotTreeTest()
- Use variancePartition dependency on GitHub
crumblr 0.99.1
- add functions to perform
mvTest() on trees
crumblr 0.99.0
- Jun 24, 2022
- Fix version number for compatibility with Bioconductor