To cite crlmm in publications use:

Carvalho BS, Louis TA, Irizarry RA. Quantifying uncertainty in genotype calls. Bioinformatics. 2010 Jan 15;26(2):242-9.

Ritchie ME, Carvalho BS, Hetrick KN, Tavar'e S. R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. Bioinformatics. 2009 Oct 1;25(19):2621-3.

Scharpf RB, Ruczinski I, Carvalho B, Doan B, Chakravarti A, Irizarry RA A multilevel model to address batch effects in copy number estimation using SNP arrays Biostatistics. 2011.

Robert B. Scharpf, Rafael A. Irizarry, Matthew E. Ritchie, Benilton Carvalho, Ingo Ruczinski (2011). Using the R Package crlmm for Genotyping and Copy Number Estimation. Journal of Statistical Software, 40(12), 1-32. URL http://www.jstatsoft.org/v40/i12/.

We have invested a lot of time and effort in creating crlmm, please cite it when using it for data analysis.

Corresponding BibTeX entries:

  @Article{,
    title = {Quantifying uncertainty in genotype calls},
    author = {Benilton S Carvalho and Thomas A Louis and Rafael A
      Irizarry},
    journal = {Bioinformatics},
    year = {2010},
    volume = {15;26(2)},
    pages = {242-9},
  }

  @Article{,
    title = {R/Bioconductor software for Illumina's Infinium
      whole-genome genotyping BeadChips},
    author = {Matthew E Ritchie and Benilton S Carvalho and Kurt N
      Hetrick and Simon Tavar'e and Rafael A Irizarry},
    journal = {Bioinformatics},
    year = {2009},
    volume = {25(19)},
    pages = {2621-3},
  }

  @Article{,
    title = {A multilevel model to address batch effects in copy number
      estimation using SNP arrays},
    author = {Robert B Scharpf and Ingo Ruczinski and Benilton Carvalho
      and Betty Doan and Aravinda Chakravarti and Rafael A Irizarry},
    journal = {Biostatistics},
    year = {2011},
    volume = {12},
    pages = {33--50},
  }

  @Article{,
    title = {Using the {R} Package {crlmm} for Genotyping and Copy
      Number Estimation},
    author = {Robert B. Scharpf and Rafael A. Irizarry and Matthew E.
      Ritchie and Benilton Carvalho and Ingo Ruczinski},
    journal = {Journal of Statistical Software},
    year = {2011},
    volume = {40},
    number = {12},
    pages = {1--32},
    url = {http://www.jstatsoft.org/v40/i12/},
  }