Package: crisprBowtie
Version: 1.17.0
Date: 2025-07-22
Title: Bowtie-based alignment of CRISPR gRNA spacer sequences
Authors@R: c(
    person("Jean-Philippe", "Fortin", email = "fortin946@gmail.com", role = c("aut", "cre")))
Depends: methods
Imports: BiocGenerics, Biostrings, BSgenome, crisprBase (>= 0.99.15),
        Seqinfo, GenomicRanges, IRanges, Rbowtie, readr, stats,
        stringr, utils
Suggests: BiocStyle, BSgenome.Hsapiens.UCSC.hg38, knitr, rmarkdown,
        testthat
biocViews: CRISPR, FunctionalGenomics, Alignment
Description: Provides a user-friendly interface to map on-targets and
        off-targets of CRISPR gRNA spacer sequences using bowtie. The
        alignment is fast, and can be performed using either
        commonly-used or custom CRISPR nucleases. The alignment can
        work with any reference or custom genomes. Both DNA- and
        RNA-targeting nucleases are supported.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.1
VignetteBuilder: knitr
BugReports: https://github.com/crisprVerse/crisprBowtie/issues
URL: https://github.com/crisprVerse/crisprBowtie
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libxml2-dev
        libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:57:50 UTC
RemoteUrl: https://github.com/bioc/crisprBowtie
RemoteRef: HEAD
RemoteSha: 37de0a3c6e7a9e2ca46434ca860d8457f4d1c4e3
NeedsCompilation: no
Packaged: 2026-07-04 02:16:02 UTC; root
Author: Jean-Philippe Fortin [aut, cre]
Maintainer: Jean-Philippe Fortin <fortin946@gmail.com>