Package: countsimQC
Type: Package
Title: Compare Characteristic Features of Count Data Sets
Version: 1.31.0
Authors@R: c(person("Charlotte", "Soneson", role = c("aut", "cre"), 
    email = "charlottesoneson@gmail.com", comment = c(ORCID = "0000-0003-3833-2169")))
Description: countsimQC provides functionality to create a
        comprehensive report comparing a broad range of characteristics
        across a collection of count matrices. One important use case
        is the comparison of one or more synthetic count matrices to a
        real count matrix, possibly the one underlying the simulations.
        However, any collection of count matrices can be compared.
License: GPL (>=2)
Encoding: UTF-8
Depends: R (>= 3.5)
Imports: rmarkdown (>= 2.5), edgeR, DESeq2 (>= 1.16.0), dplyr, tidyr,
        ggplot2, grDevices, tools, SummarizedExperiment, genefilter,
        DT, GenomeInfoDbData, caTools, randtests, stats, utils,
        methods, ragg, rlang
RoxygenNote: 7.3.3
Suggests: knitr, testthat
VignetteBuilder: knitr
biocViews: Microbiome, RNASeq, SingleCell, ExperimentalDesign,
        QualityControl, ReportWriting, Visualization, ImmunoOncology
URL: https://github.com/csoneson/countsimQC
BugReports: https://github.com/csoneson/countsimQC/issues
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev make libharfbuzz-dev libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libuv1-dev libwebp-dev libxml2-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:48:48 UTC
RemoteUrl: https://github.com/bioc/countsimQC
RemoteRef: HEAD
RemoteSha: 7740a95a08720509a98e51f8d0721ccad65a6b42
NeedsCompilation: no
Packaged: 2026-07-03 23:59:24 UTC; root
Author: Charlotte Soneson [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>)
Maintainer: Charlotte Soneson <charlottesoneson@gmail.com>