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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "coseq" in publications use:'
type: software
license: GPL-3.0-only
title: 'coseq: Co-Expression Analysis of Sequencing Data'
version: 1.29.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.coseq
abstract: Co-expression analysis for expression profiles arising from high-throughput
  sequencing data. Feature (e.g., gene) profiles are clustered using adapted transformations
  and mixture models or a K-means algorithm, and model selection criteria (to choose
  an appropriate number of clusters) are provided.
authors:
- family-names: Rau
  given-names: Andrea
  email: andrea.rau@inrae.fr
  orcid: https://orcid.org/0000-0001-6469-488X
preferred-citation:
  type: article
  title: Transformation and model choice for co-expression analysis of RNA-seq data
  authors:
  - family-names: Rau
    given-names: Andrea
    email: andrea.rau@inrae.fr
    orcid: https://orcid.org/0000-0001-6469-488X
  - family-names: Maugis-Rabusseau
    given-names: Cathy
  journal: Briefings in Bioinformatics
  volume: '19'
  issue: '3'
  year: '2018'
  start: 425-436
repository: https://bioc.r-universe.dev
commit: c3db3ad04cd415662d4288eeb9bb0334da74f3df
date-released: '2021-07-21'
contact:
- family-names: Rau
  given-names: Andrea
  email: andrea.rau@inrae.fr
  orcid: https://orcid.org/0000-0001-6469-488X
references:
- type: article
  title: Clustering transformed compositional data using K-means, with applications
    in gene expression and bicycle sharing system data
  authors:
  - family-names: Godichon-Baggioni
    given-names: Antoine
  - family-names: Maugis-Rabusseau
    given-names: Cathy
  - family-names: Rau
    given-names: Andrea
  journal: Journal of Applied Statistics
  issue: doi:10.1080/02664763.2018.1454894
  year: '2018'