Package: coseq
Type: Package
Title: Co-Expression Analysis of Sequencing Data
Version: 1.37.0
Date: 2021-07-21
Authors@R: c(
  person(given="Andrea", 
         family="Rau", 
         email="andrea.rau@inrae.fr", 
         role=c("cre", "aut"), 
         comment = c(ORCID = "0000-0001-6469-488X")),
  person(given="Cathy",
         family="Maugis-Rabusseau",
         role="ctb"),
  person(given="Antoine",
         family="Godichon-Baggioni",
         role="ctb"))
Depends: R (>= 4.0.0), SummarizedExperiment, S4Vectors
Imports: edgeR, DESeq2, capushe, Rmixmod, e1071, BiocParallel, ggplot2,
        scales, HTSFilter, corrplot, HTSCluster, grDevices, graphics,
        stats, methods, compositions, mvtnorm
Suggests: Biobase, knitr, rmarkdown, testthat, BiocStyle
Description: Co-expression analysis for expression profiles arising
        from high-throughput sequencing data. Feature (e.g., gene)
        profiles are clustered using adapted transformations and
        mixture models or a K-means algorithm, and model selection
        criteria (to choose an appropriate number of clusters) are
        provided.
biocViews: GeneExpression, RNASeq, Sequencing, Software, ImmunoOncology
License: GPL-3
LazyLoad: yes
Encoding: UTF-8
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Config/pak/sysreqs: make zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:44:55 UTC
RemoteUrl: https://github.com/bioc/coseq
RemoteRef: HEAD
RemoteSha: dc85562d8e2bb022e081fa35f4f2c8325c5cae01
NeedsCompilation: no
Packaged: 2026-07-03 21:15:21 UTC; root
Author: Andrea Rau [cre, aut] (ORCID: <https://orcid.org/0000-0001-6469-488X>),
  Cathy Maugis-Rabusseau [ctb],
  Antoine Godichon-Baggioni [ctb]
Maintainer: Andrea Rau <andrea.rau@inrae.fr>