Package: condiments
Type: Package
Title: Differential Topology, Progression and Differentiation
Authors@R: c(person("Hector", "Roux de Bezieux", role = c("aut", "cre"),
                     email = "hector.rouxdebezieux@berkeley.edu",
		     comment = c(ORCID = "0000-0002-1489-8339")),
		person("Koen", "Van den Berge", role = c("aut" , "ctb")),
		person("Kelly","Street", role = c("aut", "ctb")))
Description: This package encapsulate many functions to conduct a
        differential topology analysis. It focuses on analyzing an
        'omic dataset with multiple conditions. While the package is
        mostly geared toward scRNASeq, it does not place any
        restriction on the actual input format.
Version: 1.21.0
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://hectorrdb.github.io/condiments/index.html
Depends: R (>= 4.0)
VignetteBuilder: knitr
biocViews: RNASeq, Sequencing, Software, SingleCell, Transcriptomics,
        MultipleComparison, Visualization
BugReports: https://github.com/HectorRDB/condiments/issues
Imports: slingshot (>= 1.9), mgcv, RANN, stats, SingleCellExperiment,
        SummarizedExperiment, utils, magrittr, dplyr (>= 1.0), Ecume
        (>= 0.9.1), methods, pbapply, matrixStats, BiocParallel,
        TrajectoryUtils, igraph, distinct
RoxygenNote: 7.1.2
Suggests: knitr, testthat, rmarkdown, covr, viridis, ggplot2,
        RColorBrewer, randomForest, tidyr, TSCAN, DelayedMatrixStats
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:55:31 UTC
RemoteUrl: https://github.com/bioc/condiments
RemoteRef: HEAD
RemoteSha: c90263f07e1eac585e11d5a5d03953b2110f23ff
NeedsCompilation: no
Packaged: 2026-07-04 03:34:58 UTC; root
Author: Hector Roux de Bezieux [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-1489-8339>),
  Koen Van den Berge [aut, ctb],
  Kelly Street [aut, ctb]
Maintainer: Hector Roux de Bezieux <hector.rouxdebezieux@berkeley.edu>