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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "compcodeR" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'compcodeR: RNAseq data simulation, differential expression analysis and performance
  comparison of differential expression methods'
version: 1.41.0
abstract: This package provides extensive functionality for comparing results obtained
  by different methods for differential expression analysis of RNAseq data. It also
  contains functions for simulating count data. Finally, it provides convenient interfaces
  to several packages for performing the differential expression analysis. These can
  also be used as templates for setting up and running a user-defined differential
  analysis workflow within the framework of the package.
authors:
- family-names: Soneson
  given-names: Charlotte
  email: charlottesoneson@gmail.com
  orcid: https://orcid.org/0000-0003-3833-2169
- family-names: Bastide
  given-names: Paul
  email: paul.bastide@umontpellier.fr
  orcid: https://orcid.org/0000-0002-8084-9893
- family-names: Gallopin
  given-names: Mélina
  email: melina.gallopin@u-psud.fr
  orcid: https://orcid.org/0000-0002-2431-7825
preferred-citation:
  type: article
  title: compcodeR - an R package for benchmarking differential expression methods
    for RNA-seq data
  authors:
  - family-names: Soneson
    given-names: Charlotte
    email: charlottesoneson@gmail.com
    orcid: https://orcid.org/0000-0003-3833-2169
  year: '2014'
  journal: Bioinformatics
  volume: '30'
  issue: '17'
  start: 2517-2518
repository: https://bioc.r-universe.dev
repository-code: https://github.com/csoneson/compcodeR
url: https://github.com/csoneson/compcodeR
contact:
- family-names: Soneson
  given-names: Charlotte
  email: charlottesoneson@gmail.com
  orcid: https://orcid.org/0000-0003-3833-2169