Changes in version 1.37.3                        

    o   Removed support for baySeq since it has been deprecated

    o   Added runComparisonShiny function

                       Changes in version 1.35.1                        

    o   Add a function for SVA + limma differential expression analysis

                       Changes in version 1.31.1                        

    o   Implement simulations according to the phylogenetic poisson log normal model

    o   Implement length-varying simulations

    o   New PhyloCompData object for phylogenetic informed simulation data

    o   Add possible length normalization to DESeq2 and limma analyses

    o   Add phylolm analyses

                       Changes in version 1.23.1                        

    o   Moved vignette to Rmd

                       Changes in version 1.17.1                        

    o   Removed support for SAMseq since samr has been removed from CRAN

                        Changes in version 1.5.3                        

    o   Updated baySeq code to match package version 2.2.0

                        Changes in version 1.5.2                        

    o   Updated NBPseq code to match package version 0.3.0

                        Changes in version 1.5.1                        

    o   Added the number of significant genes, then number of true positives, true negatives, false positives and false negatives as evaluation criteria.

    o   Bug fixes

                        Changes in version 1.3.4                        

    o   Fixed documentation

                        Changes in version 1.3.3                        

    o   Removed support for HTSDiff since it has been removed from CRAN

                        Changes in version 1.3.2                        

    o   Fixed a bug that prevented data sets with more than 17,343 genes to be simulated (thanks to Simon Greenaway)

                        Changes in version 1.3.1                        

    o   Updated vignette

    o   Added citation file

                        Changes in version 1.2.0                        

    o   Release version with Bioconductor 3.0

                        Changes in version 1.1.4                        

    o   Added MCC (Matthew's correlation coefficient) as evaluation measure

                        Changes in version 1.1.3                        

    o   Fixed summarizeSyntheticDataSet to work also for non-simulated data

                        Changes in version 1.1.2                        

    o   Added reference information for TCC (thanks to Koji Kadota)

                        Changes in version 1.1.1                        

    o   Bug fix in EBSeq quantile normalization (thanks to Rory Kirchner)

                       Changes in version 0.99.3                        

    o   Bug fixes

                       Changes in version 0.99.2                        

    o   Extended the examples

    o   Bug fixes

                       Changes in version 0.99.1                        

    o   inclusion of an additional comparison metric, relating the gene score to the signal strength for genes expressed in only one condition

    o   improved documentation of the compData class

                       Changes in version 0.99.0                        

    o   identical to 0.2.0, renamed for Bioconductor submission

                        Changes in version 0.2.0                        

    o   introduction of a new S4 class (compData) and associated functions

    o   more examples, checks and error messages

    o   more options for providing user-specified values in the data simulation

    o   changed the range of the color palette in the Spearman correlation plots to [-1,1]

                        Changes in version 0.1.0                        

    o   first version