Package: comapr
Title: Crossover analysis and genetic map construction
Version: 1.17.0
Authors@R: 
    person(given = "Ruqian",
           family = "Lyu",
           role = c("aut", "cre"),
           email = "xiaoru.best@gmail.com",
           comment = c(ORCID = "0000-0002-7736-6612"))
Description: comapr detects crossover intervals for single gametes from
        their haplotype states sequences and stores the crossovers in
        GRanges object. The genetic distances can then be calculated
        via the mapping functions using estimated crossover rates for
        maker intervals. Visualisation functions for plotting
        interval-based genetic map or cumulative genetic distances are
        implemented, which help reveal the variation of crossovers
        landscapes across the genome and across individuals.
biocViews: Software, SingleCell, Visualization, Genetics
Depends: R (>= 4.1.0)
Imports: methods, ggplot2, reshape2, dplyr, gridExtra, plotly,
        circlize, rlang, GenomicRanges, IRanges, foreach, BiocParallel,
        GenomeInfoDb, scales, RColorBrewer, tidyr, S4Vectors, utils,
        Matrix, grid, stats, SummarizedExperiment, plyr, Gviz
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.2.3
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0), statmod
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev libjpeg-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:57:39 UTC
RemoteUrl: https://github.com/bioc/comapr
RemoteRef: HEAD
RemoteSha: b210ba9245c971997a58dbf0a5cd1081c6a4036b
NeedsCompilation: no
Packaged: 2026-07-06 06:29:40 UTC; root
Author: Ruqian Lyu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7736-6612>)
Maintainer: Ruqian Lyu <xiaoru.best@gmail.com>