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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "cola" in publications use:'
type: software
license: MIT
title: 'cola: A Framework for Consensus Partitioning'
version: 2.11.0
doi: 10.1093/nar/gkaa1146
abstract: 'Subgroup classification is a basic task in genomic data analysis, especially
  for gene expression and DNA methylation data analysis. It can also be used to test
  the agreement to known clinical annotations, or to test whether there exist significant
  batch effects. The cola package provides a general framework for subgroup classification
  by consensus partitioning. It has the following features: 1. It modularizes the
  consensus partitioning processes that various methods can be easily integrated.
  2. It provides rich visualizations for interpreting the results. 3. It allows running
  multiple methods at the same time and provides functionalities to straightforward
  compare results. 4. It provides a new method to extract features which are more
  efficient to separate subgroups. 5. It automatically generates detailed reports
  for the complete analysis. 6. It allows applying consensus partitioning in a hierarchical
  manner.'
authors:
- family-names: Gu
  given-names: Zuguang
  email: z.gu@dkfz.de
  orcid: https://orcid.org/0000-0002-7395-8709
preferred-citation:
  type: article
  title: 'cola: an R/Bioconductor package for consensus partitioning through a general
    framework'
  authors:
  - family-names: Gu
    given-names: Zuguang
    email: z.gu@dkfz.de
    orcid: https://orcid.org/0000-0002-7395-8709
  - family-names: Schlesner
    given-names: Matthias
  - family-names: Huebschmann
    given-names: Daniel
  journal: Nucleic Acids Research
  year: '2021'
  doi: 10.1093/nar/gkaa1146
repository: https://bioc.r-universe.dev
repository-code: https://github.com/jokergoo/cola
url: https://jokergoo.github.io/cola_collection/
date-released: '2024-02-26'
contact:
- family-names: Gu
  given-names: Zuguang
  email: z.gu@dkfz.de
  orcid: https://orcid.org/0000-0002-7395-8709
references:
- type: article
  title: Improve consensus partitioning via a hierarchical procedure
  authors:
  - family-names: Gu
    given-names: Zuguang
  - family-names: Huebschmann
    given-names: Daniel
  journal: Briefings in Bioinformatics
  year: '2022'
  doi: 10.1093/bib/bbac048