# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "cogeqc" in publications use:'
type: software
license: GPL-3.0-only
title: 'cogeqc: Systematic quality checks on comparative genomics analyses'
version: 1.9.0
doi: 10.1111/2041-210X.14243
identifiers:
- type: doi
  value: 10.32614/CRAN.package.cogeqc
abstract: 'cogeqc aims to facilitate systematic quality checks on standard comparative
  genomics analyses to help researchers detect issues and select the most suitable
  parameters for each data set. cogeqc can be used to asses: i. genome assembly and
  annotation quality with BUSCOs and comparisons of statistics with publicly available
  genomes on the NCBI; ii. orthogroup inference using a protein domain-based approach
  and; iii. synteny detection using synteny network properties. There are also data
  visualization functions to explore QC summary statistics.'
authors:
- family-names: Almeida-Silva
  given-names: Fabrício
  email: fabricio_almeidasilva@hotmail.com
  orcid: https://orcid.org/0000-0002-5314-2964
- family-names: Peer
  given-names: Yves
  name-particle: Van de
  email: yves.vandepeer@psb.vib-ugent.be
  orcid: https://orcid.org/0000-0003-4327-3730
preferred-citation:
  type: article
  title: Assessing the quality of comparative genomics data and results with the cogeqc
    R/Bioconductor package
  authors:
  - family-names: Almeida-Silva
    given-names: Fabricio
  - family-names: Peer
    given-names: Yves
    name-particle: Van de
    email: yves.vandepeer@psb.vib-ugent.be
    orcid: https://orcid.org/0000-0003-4327-3730
  journal: Methods in Ecology and Evolution
  year: '2023'
  volume: '14'
  issue: '12'
  url: https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/2041-210X.14243
  doi: 10.1111/2041-210X.14243
  start: 2942-2952
repository: https://bioc.r-universe.dev
repository-code: https://github.com/almeidasilvaf/cogeqc
commit: 88dde65859e78061a04b4943f7ae67bc5ba79ca0
url: https://support.bioconductor.org/t/cogeqc
date-released: '2022-01-26'
contact:
- family-names: Almeida-Silva
  given-names: Fabrício
  email: fabricio_almeidasilva@hotmail.com
  orcid: https://orcid.org/0000-0002-5314-2964