# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "cogena" in publications use:'
type: software
license: LGPL-3.0-only
title: 'cogena: co-expressed gene-set enrichment analysis'
version: 1.39.0
abstract: cogena is a workflow for co-expressed gene-set enrichment analysis. It aims
  to discovery smaller scale, but highly correlated cellular events that may be of
  great biological relevance. A novel pipeline for drug discovery and drug repositioning
  based on the cogena workflow is proposed. Particularly, candidate drugs can be predicted
  based on the gene expression of disease-related data, or other similar drugs can
  be identified based on the gene expression of drug-related data. Moreover, the drug
  mode of action can be disclosed by the associated pathway analysis. In summary,
  cogena is a flexible workflow for various gene set enrichment analysis for co-expressed
  genes, with a focus on pathway/GO analysis and drug repositioning.
authors:
- family-names: Jia
  given-names: Zhilong
  email: zhilongjia@gmail.com
- family-names: Barnes
  given-names: Michael
  email: m.r.barnes@qmul.ac.uk
repository: https://bioc.r-universe.dev
repository-code: https://github.com/zhilongjia/cogena
url: https://github.com/zhilongjia/cogena
contact:
- family-names: Jia
  given-names: Zhilong
  email: zhilongjia@gmail.com