We have been working on bug fixes and formatting/documentation changes as requested during the Bioconductor review. See these requests here: https://github.com/Bioconductor/Contributions/issues/2064
CpGsInfoAllRegions(), CpGsInfoOneRegion(), and GetCpGsInRegion() functions, note that we have added a new argument region_gr (in the second position) which allows for the input of a GRanges object to these functions. This will cause errors in existing code if that code uses positional argument matching. Any existing code that matches arguments by name will be unaffected.Bolstered documentation across all package help / manual files
Migrated all clean files to this repository. All development history in https://github.com/TransBioInfoLab/coMethDMR_old
Included EPIC arrays annotation (#1) Added a check that: (#5) The rownames of the beta matrix are probe IDs, and There are only numeric columns in the beta matrix