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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "cn.mops" in publications use:'
type: software
license: LGPL-2.0-or-later
title: 'cn.mops: cn.mops - Mixture of Poissons for CNV detection in NGS data'
version: 1.51.0
doi: 10.1093/nar/gks003
abstract: cn.mops (Copy Number estimation by a Mixture Of PoissonS) is a data processing
  pipeline for copy number variations and aberrations (CNVs and CNAs) from next generation
  sequencing (NGS) data. The package supplies functions to convert BAM files into
  read count matrices or genomic ranges objects, which are the input objects for cn.mops.
  cn.mops models the depths of coverage across samples at each genomic position. Therefore,
  it does not suffer from read count biases along chromosomes. Using a Bayesian approach,
  cn.mops decomposes read variations across samples into integer copy numbers and
  noise by its mixture components and Poisson distributions, respectively. cn.mops
  guarantees a low FDR because wrong detections are indicated by high noise and filtered
  out. cn.mops is very fast and written in C++.
authors:
- family-names: Klambauer
  given-names: Guenter
- family-names: Povysil
  given-names: Gundula
  email: povysil@bioinf.jku.at
preferred-citation:
  type: article
  title: 'cn.MOPS: Mixture of Poissons for Discovering Copy Number Variations in Next
    Generation Sequencing Data with a Low False Discovery Rate'
  authors:
  - family-names: Klambauer
    given-names: Guenter
  - family-names: Schwarzbauer
    given-names: Karin
  - family-names: Mayr
    given-names: Andreas
  - family-names: Mitterecker
    given-names: Andreas
  - family-names: Clevert
    given-names: Djork-Arne
  - family-names: Bodenhofer
    given-names: Ulrich
  - family-names: Hochreiter
    given-names: Sepp
  year: '2012'
  volume: '40'
  journal: Nucleic Acids Research
  doi: 10.1093/nar/gks003
  url: http://nar.oxfordjournals.org/content/40/9/e69.abstract
  start: e69
repository: https://bioc.r-universe.dev
url: http://www.bioinf.jku.at/software/cnmops/cnmops.html
date-released: '2021-11-20'
contact:
- family-names: Povysil
  given-names: Gundula
  email: povysil@bioinf.jku.at