Package: cmapR
Type: Package
Title: CMap Tools in R
Date: 2023-04-03
Version: 1.25.0
Authors@R: person("Ted", "Natoli", email="ted.e.natoli@gmail.com",
  role=c("aut", "cre"), comment=c(ORCID="0000-0002-0953-0206"))
Description: The Connectivity Map (CMap) is a massive resource of
        perturbational gene expression profiles built by researchers at
        the Broad Institute and funded by the NIH Library of Integrated
        Network-Based Cellular Signatures (LINCS) program. Please visit
        https://clue.io for more information. The cmapR package
        implements methods to parse, manipulate, and write common CMap
        data objects, such as annotated matrices and collections of
        gene sets.
License: file LICENSE
Depends: R (>= 4.0)
Imports: methods, rhdf5, data.table, flowCore, SummarizedExperiment,
        matrixStats
Suggests: knitr, testthat, BiocStyle, rmarkdown
VignetteBuilder: knitr
biocViews: DataImport, DataRepresentation, GeneExpression
URL: https://github.com/cmap/cmapR
BugReports: https://github.com/cmap/cmapR/issues
LazyData: true
RoxygenNote: 7.1.1
Config/pak/sysreqs: libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:52:08 UTC
RemoteUrl: https://github.com/bioc/cmapR
RemoteRef: HEAD
RemoteSha: 031c9df8d59b5abded05165c98091ecbbae4c797
NeedsCompilation: no
Packaged: 2026-07-03 17:29:24 UTC; root
Author: Ted Natoli [aut, cre] (ORCID: <https://orcid.org/0000-0002-0953-0206>)
Maintainer: Ted Natoli <ted.e.natoli@gmail.com>