NEWS

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clustifyr 1.15.2 (2024-04-03)

• Add support for 'Seurat' version 5 objects

clustifyr 1.15.1 (2023-10-31)

• Replace 'Seurat' dependency with 'SeuratObject'

clustifyr 1.7.3 (2022-03-09)

• 'vec_out' option for directly getting classification results as a vector, to be inserted into other metadata/workflow
• Maintainer change

clustifyr 1.5.2 (2021-10-04)

• 'clustify_lists()' support for output of overlapping genes ('details_out = TRUE')
• Added truncated mean and trimean modes to 'average_clusters()'

clustifyr 1.5.1 (2021-08-04)

• 'clustify_lists()' support for uneven number of markers
• Deprecated SeuratV2 support

clustifyr 1.3.3 (2021-02-28)

• Launch shiny app with 'run_clustifyr_app()'
• Plot and GO for most divergent ranks in correlation of query vs reference

clustifyr 1.3.2 (2021-02-25)

• 'build_atlas()' for combining references
• More Q&A

clustifyr 1.3.1 (2020-12-26)

• Q&A section
• Now defaults to top 1000 variable genes in Seurat (including v4)
• Bug fixes

clustifyr 1.1.2 (2020-09-21)

• USCS cell browser reference building
• Tutorial update
• Bug fixes

clustifyr 1.1.0 (2020-05-21)

• Bioc release
• Bug fixes

clustifyr 0.99.0 (2019-11-06)

• Update to tutorials
• Refactor arguments
• Bug fixes
• Cleanup for Bioconductor submission

clustifyr 0.0.3 (2019-09-06)

• Support of SingleCellExperiment objects and more
• Bug fixes

clustifyr 0.0.2 (2019-05-29)

• Updated discussions, benchmark, and visualization example pages
• Reorganized 'clustifyrdata' data package

clustifyr 0.0.1 (2019-02-01)

• Added direct support for 'seurat' and other object classes
• Updated readme and tutorial pages
• Moved some larger reference data to 'clustifyrdata'