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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "clusterProfiler" in publications use:'
type: software
license: Artistic-2.0
title: 'clusterProfiler: A universal enrichment tool for interpreting omics data'
version: 4.13.0
doi: 10.1016/j.xinn.2021.100141
abstract: This package supports functional characteristics of both coding and non-coding
  genomics data for thousands of species with up-to-date gene annotation. It provides
  a univeral interface for gene functional annotation from a variety of sources and
  thus can be applied in diverse scenarios. It provides a tidy interface to access,
  manipulate, and visualize enrichment results to help users achieve efficient data
  interpretation. Datasets obtained from multiple treatments and time points can be
  analyzed and compared in a single run, easily revealing functional consensus and
  differences among distinct conditions.
authors:
- family-names: Yu
  given-names: Guangchuang
  email: guangchuangyu@gmail.com
  orcid: https://orcid.org/0000-0002-6485-8781
preferred-citation:
  type: article
  title: 'clusterProfiler 4.0: A universal enrichment tool for interpreting omics
    data'
  authors:
  - family-names: Wu
    given-names: Tianzhi
  - family-names: Hu
    given-names: Erqiang
  - family-names: Xu
    given-names: Shuangbin
  - family-names: Chen
    given-names: Meijun
  - family-names: Guo
    given-names: Pingfan
  - family-names: Dai
    given-names: Zehan
  - family-names: Feng
    given-names: Tingze
  - family-names: Zhou
    given-names: Lang
  - family-names: Tang
    given-names: Wenli
  - family-names: Zhan
    given-names: Li
  - family-names: Fu
    given-names: xiaochong
  - family-names: Liu
    given-names: Shanshan
  - family-names: Bo
    given-names: Xiaochen
  - family-names: Yu
    given-names: Guangchuang
    email: guangchuangyu@gmail.com
    orcid: https://orcid.org/0000-0002-6485-8781
  journal: The Innovation
  year: '2021'
  volume: '2'
  issue: '3'
  doi: 10.1016/j.xinn.2021.100141
  start: '100141'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/GuangchuangYu/clusterProfiler
url: https://yulab-smu.top/biomedical-knowledge-mining-book/
contact:
- family-names: Yu
  given-names: Guangchuang
  email: guangchuangyu@gmail.com
  orcid: https://orcid.org/0000-0002-6485-8781
references:
- type: article
  title: 'clusterProfiler: an R package for comparing biological themes among gene
    clusters'
  authors:
  - family-names: Yu
    given-names: Guangchuang
  - family-names: Wang
    given-names: Li-Gen
  - family-names: Han
    given-names: Yanyan
  - family-names: He
    given-names: Qing-Yu
  journal: 'OMICS: A Journal of Integrative Biology'
  year: '2012'
  volume: '16'
  issue: '5'
  doi: 10.1089/omi.2011.0118
  start: 284-287
identifiers:
- type: url
  value: https://doi.org/10.1016/j.xinn.2021.100141