Please cite S. Xu (2024) for using clusterProfiler. In addition, please cite G. Yu (2010) when using GOSemSim, G. Yu (2015) when using DOSE and G. Yu (2015) when using ChIPseeker.

G Yu. Thirteen years of clusterProfiler. The Innovation. 2024, 5(6):100722

S Xu, E Hu, Y Cai, Z Xie, X Luo, L Zhan, W Tang, Q Wang, B Liu, R Wang, W Xie, T Wu, L Xie, G Yu. Using clusterProfiler to characterize multiomics data. Nature Protocols. 2024, 19(11):3292-3320

T Wu, E Hu, S Xu, M Chen, P Guo, Z Dai, T Feng, L Zhou, W Tang, L Zhan, X Fu, S Liu, X Bo, and G Yu. clusterProfiler 4.0: A universal enrichment tool for interpreting omics data. The Innovation. 2021, 2(3):100141

Guangchuang Yu, Li-Gen Wang, Yanyan Han and Qing-Yu He. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology 2012, 16(5):284-287

Corresponding BibTeX entries:

  @Article{,
    title = {Thirteen years of clusterProfiler},
    author = {Guangchuang Yu},
    url = {https://doi.org/10.1016/j.xinn.2024.100722},
    doi = {10.1016/j.xinn.2024.100722},
    journal = {The Innovation},
    month = {Nov},
    year = {2024},
    volume = {5},
    number = {6},
    pages = {100722},
  }

  @Article{,
    title = {Using clusterProfiler to characterize multiomics data},
    author = {Shuangbin Xu and Erqiang Hu and Yantong Cai and Zijing
      Xie and Xiao Luo and Li Zhan and Wenli Tang and Qianwen Wang and
      Bingdong Liu and Rui Wang and Wenqin Xie and Tianzhi Wu and Liwei
      Xie and Guangchuang Yu},
    url = {https://www.nature.com/articles/s41596-024-01020-z},
    doi = {10.1038/s41596-024-01020-z},
    journal = {Nature Protocols},
    month = {Nov},
    year = {2024},
    volume = {19},
    number = {11},
    pages = {3292-3320},
  }

  @Article{,
    title = {clusterProfiler 4.0: A universal enrichment tool for
      interpreting omics data},
    author = {Tianzhi Wu and Erqiang Hu and Shuangbin Xu and Meijun
      Chen and Pingfan Guo and Zehan Dai and Tingze Feng and Lang Zhou
      and Wenli Tang and Li Zhan and xiaochong Fu and Shanshan Liu and
      Xiaochen Bo and Guangchuang Yu},
    journal = {The Innovation},
    year = {2021},
    volume = {2},
    number = {3},
    pages = {100141},
    doi = {10.1016/j.xinn.2021.100141},
  }

  @Article{,
    title = {clusterProfiler: an R package for comparing biological
      themes among gene clusters},
    author = {Guangchuang Yu and Li-Gen Wang and Yanyan Han and Qing-Yu
      He},
    journal = {OMICS: A Journal of Integrative Biology},
    year = {2012},
    volume = {16},
    number = {5},
    pages = {284-287},
    pmid = {22455463},
    doi = {10.1089/omi.2011.0118},
  }