Package: clusterProfiler
Type: Package
Title: A Universal Enrichment Tool for Interpreting Omics Data
Version: 4.21.0
Authors@R: c(
    person(given = "Guangchuang", family = "Yu",        email = "guangchuangyu@gmail.com",   role  = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
    person(given = "Li-Gen",      family = "Wang",      email = "reeganwang020@gmail.com",   role  = "ctb"),
    person(given = "Xiao",        family = "Luo",       email = "l77880853349@163.com",      role  = "ctb"),
    person(given = "Meijun",      family = "Chen",      email = "mjchen1996@outlook.com",    role  = "ctb"),
    person(given = "Giovanni",    family = "Dall'Olio", email = "giovanni.dallolio@upf.edu", role = "ctb"),
    person(given = "Wanqian",     family = "Wei",       email = "altair_wei@outlook.com",    role = "ctb"),
    person(given = "Chun-Hui",    family = "Gao",       email = "gaospecial@gmail.com",      role = "ctb", comment = c(ORCID = "0000-0002-1445-7939"))
	)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: A universal tool for interpreting functional
        characteristics of omics data. It supports Over-Representation
        Analysis (ORA) and Gene Set Enrichment Analysis (GSEA) for both
        coding and non-coding genomics data of thousands of species. It
        provides a unified and tidy interface to access, manipulate,
        and visualize enrichment results. A key capability is the
        simultaneous analysis and comparison of datasets from multiple
        treatments or time points. Furthermore, it integrates Large
        Language Model (LLM) capabilities to provide automated and
        insightful interpretation of enrichment results.
Depends: R (>= 4.2.0)
Imports: aisdk, AnnotationDbi, dplyr, enrichit (>= 0.1.1), enrichplot
        (>= 1.9.3), ggplot2, GO.db, GOSemSim (>= 2.27.2), gson (>=
        0.0.7), httr, igraph, jsonlite, magrittr, methods, plyr,
        qvalue, rlang, stats, tidyr, utils, yulab.utils (>= 0.2.3)
Suggests: AnnotationHub, BiocManager, DOSE, ggtangle, readr,
        org.Hs.eg.db, quarto, testthat
VignetteBuilder: quarto
ByteCompile: true
License: Artistic-2.0
URL: https://yulab-smu.top/contribution-knowledge-mining/
BugReports: https://github.com/YuLab-SMU/clusterProfiler/issues
Packaged: 2026-05-30 08:57:32 UTC; root
biocViews: Annotation, Clustering, GeneSetEnrichment, GO, KEGG,
        MultipleComparison, Pathways, Reactome, Visualization
Encoding: UTF-8
RoxygenNote: 7.3.3
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:35:12 UTC
RemoteUrl: https://github.com/bioc/clusterProfiler
RemoteRef: HEAD
RemoteSha: 400f57a5dccaaa0a4ea5cb34caf2f3a2b2a6ea4b
NeedsCompilation: no
Author: Guangchuang Yu [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-6485-8781>),
  Li-Gen Wang [ctb],
  Xiao Luo [ctb],
  Meijun Chen [ctb],
  Giovanni Dall'Olio [ctb],
  Wanqian Wei [ctb],
  Chun-Hui Gao [ctb] (ORCID: <https://orcid.org/0000-0002-1445-7939>)