NEWS

clustComp 1.5.2

A new feature is added to flatVShier(); if the expanded version of the dendrogram is plotted, a coloured bar on the right hand side displays how genes are distributed across the flat clusters.
New arguments ‘bar1.col’ and ‘bar2.col’ in flatVShier() allow tuning the coloured bars when the expanded dendrogram is plotted.
Argument ‘weights’ in flatVSflat() is replaced by ‘flat1’ and ‘flat2’ for analogy with flatVShier().
New argument ‘greedy’ in flatVSflat() allows displaying the one-to-one mapping between superclusters as in flatVShier() after finding the best layout for the bi-graph.
New argument ‘greedy.colours’ allows setting up the visualisation of the mapping between superclusters, as in flatVShier().
The visualisation of superclusters in SCmapping() includes new labels with their sizes.
Internal function drawTreeGraph() includes new arguments ‘flat.obj’, ‘bar1.col’ and ‘bar2.col’ to display the second coloured bar and control the colours.

Added new arguments ‘expression’, ‘layout’ and ‘ramp’ to flatVShier(), to provide more flexibility to the plot layout. NEW FEATURE:
The expanded version of the flatVShier() function allows adding the heatmap of the data, ordered according to the resulting hierarchical tree. BUG FIX
Fix bug in plotting the flatVSflat comparison.