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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "cigarillo" in publications use:'
type: software
license: Artistic-2.0
title: 'cigarillo: Efficient manipulation of CIGAR strings'
version: 1.3.0
doi: 10.32614/CRAN.package.cigarillo
abstract: CIGAR stands for Concise Idiosyncratic Gapped Alignment Report. CIGAR strings
  are found in the BAM files produced by most aligners and in the AIRR-formatted output
  produced by IgBLAST. The cigarillo package provides functions to parse and inspect
  CIGAR strings, trim them, turn them into ranges of positions relative to the "query
  space" or "reference space", and project positions or sequences from one space to
  the other. Note that these operations are low-level operations that the user rarely
  needs to perform directly. More typically, they are performed behind the scene by
  higher-level functionality implemented in other packages like Bioconductor packages
  GenomicAlignments and igblastr.
authors:
- family-names: Pagès
  given-names: Hervé
  email: hpages.on.github@gmail.com
  orcid: https://orcid.org/0009-0002-8272-4522
- family-names: Obenchain
  given-names: Valerie
- family-names: Lawrence
  given-names: Michael
  email: lawremi@gmail.com
repository: https://bioc.r-universe.dev
repository-code: https://github.com/Bioconductor/cigarillo
commit: df1f0466acbe21c278861c82da76c16c6d02a01a
url: https://bioconductor.org/packages/cigarillo
date-released: '2026-04-28'
contact:
- family-names: Pagès
  given-names: Hervé
  email: hpages.on.github@gmail.com
  orcid: https://orcid.org/0009-0002-8272-4522