# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "cicero" in publications use:'
type: software
license: MIT
title: 'cicero: Predict cis-co-accessibility from single-cell chromatin accessibility
  data'
version: 1.23.0
doi: 10.1016/j.molcel.2018.06.044
identifiers:
- type: doi
  value: 10.32614/CRAN.package.cicero
abstract: Cicero computes putative cis-regulatory maps from single-cell chromatin
  accessibility data. It also extends monocle 2 for use in chromatin accessibility
  data.
authors:
- family-names: Pliner
  given-names: Hannah
  email: hpliner@uw.edu
- family-names: Trapnell
  given-names: Cole
  email: coletrap@uw.edu
preferred-citation:
  type: article
  title: Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin
    Accessibility Data
  authors:
  - family-names: Pliner
    given-names: Hannah A.
  - family-names: Packer
    given-names: Jonathan S.
  - family-names: McFaline-Figueroa
    given-names: José L.
  - family-names: Cusanovich
    given-names: Darren A.
  - family-names: Daza
    given-names: Riza M.
  - family-names: Aghamirzaie
    given-names: Delasa
  - family-names: Srivatsan
    given-names: Sanjay
  - family-names: Qiu
    given-names: Xiaojie
  - family-names: Jackson
    given-names: Dana
  - family-names: Minkina
    given-names: Anna
  - family-names: Adey
    given-names: Andrew C.
  - family-names: Steemers
    given-names: Frank J.
  - family-names: Shendure
    given-names: Jay
  - family-names: Trapnell
    given-names: Cole
    email: coletrap@uw.edu
  journal: Molecular Cell
  volume: '71'
  issue: '5'
  year: '2018'
  issn: 1097-2765
  doi: 10.1016/j.molcel.2018.06.044
  start: 858 - 871.e8
repository: https://bioc.r-universe.dev
commit: c8c451922b2940865e51212f3d2993dca6081064
contact:
- family-names: Pliner
  given-names: Hannah
  email: hpliner@uw.edu