Package: chipseqDB
Title: A Bioconductor Workflow to Detect Differential Binding in
        ChIP-seq Data
Version: 1.37.0
Date: 2020-11-25
Authors@R: c(person(role=c("aut","cre"), "Aaron", "Lun", email = "infinite.monkeys.with.keyboards@gmail.com"),
        person(role="aut", "Gordon ", "Smyth"))
Description: Describes a computational workflow for performing a DB
        analysis with sliding windows. The aim is to facilitate the
        practical implementation of window-based DB analyses by
        providing detailed code and expected output. The workflow
        described here applies to any ChIP-seq experiment with multiple
        experimental conditions and multiple biological samples in one
        or more of the conditions. It detects and summarizes DB regions
        between conditions in a de novo manner, i.e., without making
        any prior assumptions about the location or width of bound
        regions. Detected regions are then annotated according to their
        proximity to genes.
Suggests: chipseqDBData, BiocStyle, BiocFileCache, ChIPpeakAnno, Gviz,
        Rsamtools, TxDb.Mmusculus.UCSC.mm10.knownGene, csaw, edgeR,
        knitr, org.Mm.eg.db, rtracklayer, rmarkdown
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: ImmunoOncologyWorkflow, Workflow, EpigeneticsWorkflow
Workflow: true
NeedsCompilation: no
URL: https://www.bioconductor.org/help/workflows/chipseqDB/
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:40:22 UTC
RemoteUrl: https://github.com/bioc/chipseqDB
RemoteRef: HEAD
RemoteSha: 4316cbe7ae02efcb24daeaf9663f6378e0cffe51
Packaged: 2026-10-31 12:06:19 UTC; root
Author: Aaron Lun [aut, cre],
  Gordon Smyth [aut]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>