Package: censcyt
Version: 1.21.0
Title: Differential abundance analysis with a right censored covariate
        in high-dimensional cytometry
Description: Methods for differential abundance analysis in
        high-dimensional cytometry data when a covariate is subject to
        right censoring (e.g. survival time) based on multiple
        imputation and generalized linear mixed models.
Authors@R: person("Reto", "Gerber", email = "gerberreto@pm.me", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-5414-8906"))
URL: https://github.com/retogerber/censcyt
BugReports: https://github.com/retogerber/censcyt/issues
License: MIT + file LICENSE
biocViews: ImmunoOncology, FlowCytometry, Proteomics, SingleCell,
        CellBasedAssays, CellBiology, Clustering, FeatureExtraction,
        Software, Survival
Depends: R (>= 4.0), diffcyt
Imports: BiocParallel, broom.mixed, dirmult, dplyr, edgeR,
        fitdistrplus, lme4, magrittr, MASS, methods, mice, multcomp,
        purrr, rlang, S4Vectors, stats, stringr, SummarizedExperiment,
        survival, tibble, tidyr, utils
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown, testthat, ggplot2
RoxygenNote: 7.1.2
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libicu-dev libpng-dev libxml2-dev libssl-dev
        perl libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:54:37 UTC
RemoteUrl: https://github.com/bioc/censcyt
RemoteRef: HEAD
RemoteSha: 8bd67697e52ccdfa77ff9888c13c653b528e8d5b
NeedsCompilation: no
Packaged: 2026-07-04 04:43:13 UTC; root
Author: Reto Gerber [aut, cre] (ORCID: <https://orcid.org/0000-0001-5414-8906>)
Maintainer: Reto Gerber <gerberreto@pm.me>