Package: cellscape
Title: Explores single cell copy number profiles in the context of a
        single cell tree
Version: 1.37.0
Authors@R: c(
    person("Shixiang", "Wang", , "w_shixiang@163.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9855-7357")),
    person("Maia", "Smith", , "maiaannesmith@gmail.com", role = "aut")
  )
Description: CellScape facilitates interactive browsing of single cell
        clonal evolution datasets. The tool requires two main inputs:
        (i) the genomic content of each single cell in the form of
        either copy number segments or targeted mutation values, and
        (ii) a single cell phylogeny. Phylogenetic formats can vary
        from dendrogram-like phylogenies with leaf nodes to
        evolutionary model-derived phylogenies with observed or latent
        internal nodes. The CellScape phylogeny is flexibly input as a
        table of source-target edges to support arbitrary
        representations, where each node may or may not have associated
        genomic data. The output of CellScape is an interactive
        interface displaying a single cell phylogeny and a
        cell-by-locus genomic heatmap representing the mutation status
        in each cell for each locus.
License: GPL-3
Depends: R (>= 3.3)
Imports: dplyr (>= 0.4.3), gtools (>= 3.5.0), htmlwidgets (>= 0.5),
        jsonlite (>= 0.9.19), reshape2 (>= 1.4.1), stringr (>= 1.0.0)
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Visualization
Encoding: UTF-8
RoxygenNote: 7.2.3
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:45:09 UTC
RemoteUrl: https://github.com/bioc/cellscape
RemoteRef: HEAD
RemoteSha: 99b5d1a61a75d9f95a993b012d2ff2d2dc6d989a
NeedsCompilation: no
Packaged: 2026-06-16 07:48:56 UTC; root
Author: Shixiang Wang [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9855-7357>),
  Maia Smith [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>