Package: cellbaseR
Type: Package
Date: 2016-04-17
Title: Querying annotation data from the high performance Cellbase web
Version: 1.37.0
Author: Mohammed OE Abdallah
Maintainer: Mohammed OE Abdallah <melsiddieg@gmail.com>
URL: https://github.com/melsiddieg/cellbaseR
Description: This R package makes use of the exhaustive RESTful Web
        service API that has been implemented for the Cellabase
        database. It enable researchers to query and obtain a wealth of
        biological information from a single database saving a lot of
        time. Another benefit is that researchers can easily make
        queries about different biological topics and link all this
        information together as all information is integrated.
License: Apache License (== 2.0)
Depends: R(>= 3.4)
Imports: methods, jsonlite, httr, data.table, pbapply, tidyr, R.utils,
        Rsamtools, BiocParallel, foreach, utils, parallel, doParallel
Suggests: BiocStyle, knitr, rmarkdown, Gviz, VariantAnnotation
RoxygenNote: 7.2.3
biocViews: Annotation, VariantAnnotation
Lazy: TRUE
Encoding: UTF-8
Collate: 'commons.R' 'AllClasses.R' 'AllGenerics.R'
        'AnnotateVcf-methods.R' 'CellBaseParam-methods.R'
        'CellBaseR-methods.R' 'cellbase.R' 'getCellbase-methods.R'
        'getChromosomeInfo-methods.R' 'getClinical-methods.R'
        'getGene-methods.R' 'getMeta-methods.R' 'getProtein-methods.R'
        'getRegion-methods.R' 'getTranscript-methods.R'
        'getVariant-methods.R' 'getXref-methods.R' 'show-methods.R'
        'tools.R' 'user.R'
VignetteBuilder: knitr
Config/pak/sysreqs: libbz2-dev libicu-dev liblzma-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:45:35 UTC
RemoteUrl: https://github.com/bioc/cellbaseR
RemoteRef: HEAD
RemoteSha: 01b61c7a0e509ed9ac824497cf27001167db7642
NeedsCompilation: no
Packaged: 2026-07-02 07:28:36 UTC; root