To cite cellNexus in publications use:

Mangiola S, Shen M, Gao Y, Liu N, Bhuva D, Milton M, Henao J, Andrews J, Yang E, Zhan C, Liu N, Si S, Hutchison JW, Shakeel HM, Morgan M, Papenfuss AT, Iskander J, Polo JM (2026). “cellNexus: Quality control, annotation, aggregation and analytical layers for the Human Cell Atlas data.” bioRxiv. doi:10.64898/2026.04.14.718336.

URL: https://github.com/MangiolaLaboratory/cellNexus

Corresponding BibTeX entry:

  @Article{,
    title = {cellNexus: Quality control, annotation, aggregation and
      analytical layers for the Human Cell Atlas data},
    author = {Stefano Mangiola and Mengyuan Shen and Yingnan Gao and
      Ning Liu and Dharmesh Bhuva and Michael Milton and Juan Henao and
      Jared Andrews and Edward Yang and Chen Zhan and Nora Liu and S Si
      and J. William Hutchison and Haroon M. Shakeel and Martin Morgan
      and Anthony T. Papenfuss and Julie Iskander and Jose M. Polo},
    year = {2026},
    journal = {bioRxiv},
    doi = {10.64898/2026.04.14.718336},
  }