NEWS

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celaref 1.1.10

UPDATES

• Support for passing hdf5-backed SummarizedExperiment objects (internal conversion to sparse)
• Explicitly handle multiple assay() in the summarizedExperiment. Must have a named 'counts' assay, or, just the one unnamed assay.

BUG FIXES

• Subsampling per group should actually be used now.

celaref 1.1.8

UPDATES

• Updated vignette with large data handling.
• Doco updates
• make_ranking_violin_plot can pass parameters (e.g. rankmetrics) with ...

celaref 1.1.4

UPDATES

• Methods/options to subset large datatsets.

celaref 1.1.3

UPDATES

• None. Version bump for build only.

celaref 1.1.2

UPDATES

• Testing tests

celaref 1.1.1

BUG FIXES

• Internal SingleCellAssay coercion bugfix. Should no longer require library(MAST) call to work.

UPDATES

• Partying hard with unit tests woo

celaref 1.1.0

UPDATES

• Option to change the gene ranking metric. Maybe useful for similar cell types like PBMCs.
• Use sparse matricies to support larger datasets in less RAM.

celaref 1.0.1

UPDATES

• First bioconductor version

celaref 0.99.1

BUG FIXES

• Code style.
• Do not attempt to multithread on windows (suggest mulithread on linux).

celaref 0.99.0

NEW FEATURES

• Initial Version.