NEWS
ccfindR 1.5.0
Changes
- Revised default meta_gene.cv(..., cv.max=Inf)
- Added assignCelltype(...)
ccfindR 1.4.1
Changes
- Added URL to published article.
- Revised optimal_rank(...) such that Bayes factor criterion is
used.
- Fixed filter_genes(...) for cases with non-expressed genes
ccfindR 1.3.1
Changes
- Changed definition of likelihood function in ML-NMF outputs from
factorize(...)
such that matrix elements with zero counts are included
ccfindR 1.3.0
Changes
- Added C++ code update step in vb_factorize(..., useC=TRUE)
- Added Singular value decomposition initializer for
vb_factorize(..., initializer='svd2')
random initial condition: initializer='random'
- Changed default: filter_genes(...,rescue.genes=FALSE)
- Changed filter_genes(), vmr.min action from vmr >= vmr.min to vmr > vmr.min
(removes genes with vmr=0)
- Added parallel run for vb_factorize(..., ncores=10)
- Added feature_map(...)
ccfindR 1.0.0 (2018-04-06)
Changes
- Split plot functionality from filter_genes() into plot_genes().
- Removed file name arguments from read_10x() and write_10x().