Package: cbaf
biocViews: Software, AssayDomain, DNAMethylation, GeneExpression,
        Transcription, Microarray,ResearchField, BiomedicalInformatics,
        ComparativeGenomics, Epigenetics, Genetics, Transcriptomics
Title: Automated functions for comparing various omic data from
        cbioportal.org
Version: 1.35.0
Authors@R: c(person("Arman", "Shahrisa", role = c("aut", "cre", "cph"),
                     email = "shahrisa.arman@hotmail.com"),
            person("Maryam", "Tahmasebi Birgani", role = "aut",
                     email = "tahmasebi-ma@ajums.ac.ir"))
Description: This package contains functions that allow analysing and
        comparing omic data across various cancers/cancer subgroups
        easily. So far, it is compatible with RNA-seq, microRNA-seq,
        microarray and methylation datasets that are stored on
        cbioportal.org.
Depends: R (>= 4.1)
License: Artistic-2.0
Encoding: UTF-8
Imports: BiocFileCache, RColorBrewer, cBioPortalData, genefilter,
        gplots, grDevices, stats, utils, openxlsx, zip
NeedsCompilation: no
RoxygenNote: 7.3.3
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
Collate: 'cbaf-obtainMultipleStudies.R' 'cbaf-obtainOneStudy.R'
        'cbaf-automatedStatistics.R' 'cbaf-availableData.R'
        'cbaf-cleanDatabase.R' 'cbaf-constants.R'
        'cbaf-heatmapOutput.R' 'cbaf-processMultipleStudies.R'
        'cbaf-processOneStudy.R' 'cbaf-xlsxOutput.R' 'zzz.R'
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libpng-dev libsecret-1-dev libuv1-dev libxml2-dev libssl-dev
        libx11-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:46:31 UTC
RemoteUrl: https://github.com/bioc/cbaf
RemoteRef: HEAD
RemoteSha: cb59d464b42595140f50947ff9f7040d81b9b084
Packaged: 2026-06-07 06:44:34 UTC; root
Author: Arman Shahrisa [aut, cre, cph],
  Maryam Tahmasebi Birgani [aut]
Maintainer: Arman Shahrisa <shahrisa.arman@hotmail.com>