Changes in version 0.99.5                        

  - Vignette: how the package fits into Bioconductor and how it differs
    from related packages.

                       Changes in version 0.99.4                        

  - Removed a stray copy of the package from a subfolder.

                       Changes in version 0.99.3                        

  - Pairs holding only an R2 (non-descendant) relation are tested again
    in later sweeps; R2 in both directions makes a pair unrelated
    (symmetry).

                       Changes in version 0.99.2                        

  - README wording.

                       Changes in version 0.99.1                        

  - SummarizedExperiment is now imported (Bioconductor dependency).
  - simulateTwoTier() no longer calls set.seed(); call it before
    simulating.
  - Labelled vignette chunks, 4-space indentation, no
    suppressWarnings().

                       Changes in version 0.99.0                        

  - Initial Bioconductor submission.
  - ascend() for matrices, data frames and SummarizedExperiment objects;
    ascendMultiAssay() for MultiAssayExperiment objects.
  - AscendResult class with ancestralMatrix(), ancestralEdges(),
    pairPValues() and ascendStats().
  - simulateTwoTier(), trueAncestral() and evaluateAncestral() for
    simulation and benchmarking.
  - Results are identical to the implementation used in the paper.