Package: categoryCompare
Version: 1.57.0
Title: Meta-analysis of high-throughput experiments using feature
        annotations
Author: Robert M. Flight <rflight79@gmail.com>
Maintainer: Robert M. Flight <rflight79@gmail.com>
URL: https://github.com/rmflight/categoryCompare
BugReports: https://github.com/rmflight/categoryCompare/issues
License: GPL-2
Depends: R (>= 2.10), Biobase, BiocGenerics (>= 0.13.8),
Suggests: knitr, GO.db, KEGGREST, estrogen, org.Hs.eg.db, hgu95av2.db,
        limma, affy, genefilter, rmarkdown
Imports: AnnotationDbi, hwriter, GSEABase, Category (>= 2.33.1),
        GOstats, annotate, colorspace, graph, RCy3 (>= 1.99.29),
        methods, grDevices, utils
LazyLoad: yes
Description: Calculates significant annotations (categories) in each of
        two (or more) feature (i.e. gene) lists, determines the overlap
        between the annotations, and returns graphical and tabular data
        about the significant annotations and which combinations of
        feature lists the annotations were found to be significant.
        Interactive exploration is facilitated through the use of
        RCytoscape (heavily suggested).
SystemRequirements: Cytoscape (>= 3.6.1) (if used for visualization of
        results, heavily suggested)
TODO: Text and HTML output without graphs.
biocViews: Annotation, GO, MultipleComparison, Pathways, GeneExpression
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libicu-dev libpng-dev libuv1-dev
        libxml2-dev libssl-dev python3 libzmq3-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:36:29 UTC
RemoteUrl: https://github.com/bioc/categoryCompare
RemoteRef: HEAD
RemoteSha: 05d1e21d8c9b90b23b3308c7d596947d902136c1
NeedsCompilation: no
Packaged: 2026-07-03 22:31:33 UTC; root