Please cite the paper below when using casper, and the appropriate
methodology articles indicated in the help page of the functions you're
using.

  Rossell D, Stephan-Otto Attolini C, Kroiss M, Stocker A. Quantifying
  Alternative Splicing from Paired-End RNA-sequencing data. Annals of
  Applied Statistics, 8(1):309-330

A BibTeX entry for LaTeX users is

  @Article{,
    author = {Rossell D. and Stephan-Otto Attolini C. and Kroiss M. and Stocker A.},
    title = {Quantifying alternative splicing from paired-end RNA-seq data},
    journal = {Annals of Applied Statistics},
    year = {2014},
    volume = {8},
    number = {1},
    pages = {309-330},
  }