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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "carnation" in publications use:'
type: software
license: MIT
title: 'carnation: Interactive Exploration & Management of RNA-Seq Analyses'
version: 1.1.0
doi: 10.32614/CRAN.package.carnation
abstract: 'Highly interactive & modular shiny app to explore three facets of RNA-Seq
  analysis: differential expression (DE), functional enrichment and pattern analysis.
  Several visualizations are implemented to provide a wide-ranging view of data sets.
  For DE analysis, we provide PCA plot, MA plot, Upset plot & heatmaps, in addition
  to a highly customizable gene plot. Seven different visualizations are available
  for functional enrichment analysis, and we also support gene pattern analysis. Genes
  of interest can be tracked across all modules using the gene scratchpad. In addition,
  carnation provides an integrated platform to manage multiple projects and user access
  that can be run on a central server to share with collaborators.'
authors:
- family-names: Mitra
  given-names: Apratim
  email: apratim.mitra@gmail.com
  orcid: https://orcid.org/0000-0003-3279-0054
repository: https://bioc.r-universe.dev
repository-code: https://github.com/NICHD-BSPC/carnation
commit: 4789c1f5fd2ca0228212e8dceeacd2166fcaee06
url: https://nichd-bspc.github.io/carnation/
date-released: '2026-04-28'
contact:
- family-names: Mitra
  given-names: Apratim
  email: apratim.mitra@gmail.com
  orcid: https://orcid.org/0000-0003-3279-0054