NEWS

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carnation 0.99.10

• add edgeR/limma support for input files and objects.
• allow addition of degPatterns/pattern analysis results via UI
• improve object validation
• add helper functions to edit carnation default settings

carnation 0.99.9

• carnation now supports edgeR and limma output in differential expression analysis.
• The scatter plot now allows gene selection directly from the plot and viewed in the table. Genes selected in the table can be added to the gene scratchpad and tracked across the app.
• The main loading page now shows the currently loaded dataset. This prevents accidentally reloading or replacing the current data.
• Pattern analysis can now be added to a carnation object via the Load data module, either in TSV or Rds format.

carnation 0.99.8

• Add packages to Suggests:: to address build issues.

carnation 0.99.7

• Add unit tests
• Address Bioconductor review comments

carnation 0.99.6

• Made R CMD check more efficient by switching multiple module server examples to examplesIf interactive().

carnation 0.99.3

• removed clusterProfiler & DEGreport from Suggests
• added examples to exported functions

carnation 0.99.1

• Updated vignette with carnation app screenshots
• Added vignette dependencies to Suggests

carnation 0.99.0

• carnation submitted to bioconductor for review