Package 'cancerdata'

Development and validation of diagnostic tests from high-dimensional molecular data: Datasets

Description

This package contains dataset for the R package cancerclass.

Details

Package:	cancerdata
Type:	Package
Version:	1.1.0
Date:	2010-10-26
License:	GPL (>=2)

Author(s)

Jan Budczies [email protected], Daniel Kosztyla [email protected]

References

[1] Michiels S, Koscielny S, Hill C (2005), Prediction of cancer outcome with microarrays: a multiple random validation strategy, Lancet 365:488-492.

See Also

VEER1

Examples

### see: help(VEER1);

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Breast cancer gene expression data (van't Veer)

Description

Gene expression data from the breast cancer microarray study of van't Veer et al. [1]. The data set VEER includes gene expression values of 24481 genes in 78 tumor samples. The data set VEER1 is a filtered version [2] of VEER including gene expression values of 4948 genes in 78 tumor samples).

Usage

data(VEER) 
  data(VEER1)

Value

Data and annotations are organized in a ExtressenSet of the package Biobase.

VEER	ExpressionSet
VEER1	ExpressionSet

References

[1] van 't Veer LJ et al. (2002), Gene expression profiling predicts clinical outcome of breast cancer, Nature 415:530-536.
[2] Michiels S, Koscielny S, Hill C (2005), Prediction of cancer outcome with microarrays: a multiple random validation strategy, Lancet 365:488-492.

Examples

### see: help(GOLUB);

---

Breast cancer gene expression data (Vijver)

Description

Gene expression data from the breast cancer microarray study of Vijver et al. [1]. The data set VIJVER includes expression values of 24481 genes in 295 tumor samples. The data set VIJVER1 is a filtered version of VIJVER [2] including expression values of 4948 genes in 295 tumor samples.

Usage

data(VIJVER)
  data(VIJVER1)

Value

Data and annotations are organized in a ExtressenSet of the package Biobase.

VIJVER	ExpressionSet
VIJVER1	ExpressionSet

References

[1] van de Vijver MJ, He YD, van't Veer LJ, et al. (2002): A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med, 347:1999-2009.
[2] Michiels S, Koscielny S, Hill C (2005), Prediction of cancer outcome with microarrays: a multiple random validation strategy, Lancet 365:488-493.

Examples

### see: help(GOLUB);

---

Breast cancer gene expression data (van't Veer, young patients)

Description

Gene expression data from the breast cancer microarray study of van't Veer et al. [1]. The data set VEER includes gene expression values of 24481 genes in 19 tumor samples. The data set VEER1 is a filtered version [2] of VEER including gene expression values of 4948 genes in 19 tumor samples).

Usage

data(YOUNG)
  data(YOUNG1)

Value

Data and annotations are organized in a ExtressenSet of the package Biobase.

YOUNG	ExpressionSet
YOUNG1	ExpressionSet

References

[1] van 't Veer LJ et al (2002), Gene expression profiling predicts clinical outcome of breast cancer, Nature 415:530-56.
[2] Michiels S, Koscielny S, Hill C (2005), Prediction of cancer outcome with microarrays: a multiple random validation strategy, Lancet 365:488-492.

Examples

### see: help(GOLUB);

---